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Baby Probiotics for Newborns and Gut Health

0-4 months
Article

Baby Probiotics for Newborns and Gut Health

Mar 10, 2025
6 mins

Wondering how to support your infant's gut health? Learn how baby probiotics may help.

Good gut health is crucial during infancy and early childhood as it plays a vital role in the development of the digestive system, immune health, and overall well-being. The early years through infancy and childhood are particularly important for establishing healthy gut bacteria and microbiome. During this critical period, providing proper nutrition, breastfeeding if possible, introducing diverse and nutritious foods, and avoiding unnecessary antibiotics can support the growth of beneficial gut bacteria. By finding ways to improve gut health in the early stages of life, parents can lay a strong foundation for their baby's long-term health and well-being.

 

Why do babies get upset tummies?

Your baby’s digestive system is still learning how to process nutrients and waste as they eat and drink. As their digestive system is still developing, there may be some uncomfortable stages they go through. Changes in diet, for example, introducing solid food for the first time, can be quite unsettling for some sensitive babies and this could lead to common tummy upsets or discomfort throughout the first years of life.  Another common cause of upset tummies in babies is antibiotics, as they unfortunately kill off the good gut bacteria as well as the bad gut bacteria.

 

What can I do to help my baby’s gut health?

First, always ensure your baby has a good balance of nutrients in their diet. Breast milk provides the best start in life for babies.

Second, prebiotics and probiotics for infants are your friends! They both encourage the growth of “friendly” bacteria, which can help support your infant’s gut health. Breast milk is nature’s own source of infant probiotics and prebiotics in the form of Human Milk Oligosaccharides (HMOs). The combination of prebiotics and probiotics support your baby’s developing microbiome and is integral to their immune and digestive health.  

 

What are probiotics?

Probiotics are live microorganisms or bacteria which, when consumed in adequate amounts provide a health benefit. 

The bacteria (live microorganisms) in our gut, form part of our gut microbiome, and are important for our health. Your child’s microbiome is at an important time in its development so it’s important to get the balance of good and bad bacteria right in early life!

Infant probiotics are suitable for babies. Look for the age suitability on the front of pack. Probiotics for babies help reinforce or restore the friendly bacteria in your baby’s digestive tract to support their digestive health.

The most common type of infant probiotic comes from the Bifidobacterium family. Bifidobacteria is the most common probiotic found in the digestive system of breastfed babies.
 

What are prebiotics?

Prebiotics are a source of non-digestible fibre that serve as food for beneficial bacteria in the gut. They can help promote infant gut health by selectively stimulating the growth and activity of beneficial bacteria. Prebiotics act as a fuel source for these bacteria, allowing them to thrive and maintain a healthy balance in the gut microbiome. Breast milk is an excellent natural prebiotic food, as it contains Human Milk Oligosaccharides (HMOs). By supporting the growth of beneficial bacteria, HMOs help support the growing immune system, and contribute to overall gut health in babies. When solid foods are introduced around 6 months of age, introducing prebiotic-rich foods or using prebiotic supplements may help support a healthy gut microbiome in infants.

 

Probiotic & Prebiotic Foods to Improve Baby Gut Health

  • Breast milk – nature's superfood! Breastfeeding delivers good bacteria to your baby’s gut directly from your breast milk, and by feeding off the breast (skin contact). Breast milk also contains Human Milk Oligosaccharides (HMOs) – unique types of prebiotic food that the good bacteria prefer. So breast milk not only supplies your little one with healthy bacteria, it also provides the food to feed them as well! 
  • Some toddler milk drinks (suitable from 1 year) contain different types of probiotics. Some contain plant-based prebiotics. 
  • Dairy products such as yoghurt (live-cultured) or kefir contain various strains of probiotics. 
  • Prebiotic foods include grains (oats, barley), fresh fruits (such as bananas, kiwi fruit, apples) and vegetables (such as artichoke, onion and garlic).
  • Supplements designed for babies and young children, in liquid, powder or chewable form.

Check the ingredient list of products and ask your health professional for advice. No matter what probiotic foods or form of probiotic you choose, probiotics need to be consumed regularly to confer a health benefit.

 

Choosing the right probiotic for your child 

  1. Talk to your healthcare professional - Not all probiotics have the same benefits, so talk to your healthcare professional to find the one that meets your baby’s needs. 
  2. Consider the age of your child - Breast milk or infant formula should be the sole source of nutrition for infants until around 6 months of age.  If your child is under 6 months of age, choose a probiotic or prebiotic supplement that is designed for babies from birth. Solid or complementary food sources of probiotics are not suitable until around 6 months of age.

 

Storing your probiotics

Many probiotic supplements don’t need to be kept refrigerated, but exposure to high temperatures and humidity may affect their success.

Don’t add probiotic powders or capsule contents to very hot foods or beverages, as the heat may destroy the live bacteria.

Always follow manufacturer’s instructions for storage of probiotic product.

Frequently asked questions about baby probiotics

Do breastfed babies need probiotics?

Breastfed babies are naturally supported as breast milk naturally contains beneficial bacteria and human milk oligosaccharides (HMOs) that support a healthy gut microbiome. These components help promote the growth of good bacteria and support an infant's immune system. However, some breastfed babies may benefit, such as if the baby is born via caesarean section (c-section), is on antibiotics, has a family history of allergies, or experiences gastrointestinal issues. Always consult with a healthcare professional before introducing any supplements to ensure they are appropriate for your baby's specific needs and health circumstances.

Do probiotics transfer through breast milk?

Probiotics can directly transfer through breast milk in small amounts, however the primary role of breast milk is to provide the necessary nutrients and support for the development of the infant's own gut microbiome. Breast milk contains prebiotics and beneficial compounds that promote the growth of healthy bacteria in the infant's gut. If considering probiotics as a breastfeeding mother or for your baby, it is advisable to talk to your healthcare professional for guidance tailored to individual circumstances.

What do probiotics do to baby poop?

Probiotics can positively influence a baby's stool by promoting a healthy gut microbiome. When probiotics are introduced, they can help regulate bowel movements, potentially leading to softer and more regular stools. For infants, this may mean less constipation and a reduction in diarrhoea episodes. Probiotics can also enhance the overall digestion and absorption of nutrients, contributing to a healthier digestive system. However, the effects can vary based on the individual baby and the specific probiotic strains used. It is always advisable to consult with a healthcare professional before introducing probiotics to ensure they are appropriate for your baby's needs.

Will a probiotic help a gassy baby?

Probiotics may help alleviate gas in a gassy baby by promoting a balanced gut microbiome and improving digestion. They can aid in breaking down certain carbohydrates that may contribute to gas production, potentially leading to less discomfort and fewer gas-related symptoms. Some specific probiotic strains are linked to reduced colic symptoms and improved overall digestive health in infants. However, the effectiveness can vary from baby to baby, talk to your healthcare professional to determine the most suitable option for your child

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Related FAQ's

What’s the link between antibiotics and gut health for my baby?

Parenting FAQs

Your baby has beneficial, or “friendly”, bacteria in their gut, but also “bad” bacteria. The balance between these two is important for healthy digestive and immune systems. Antibiotics can disrupt your baby’s developing gut microbiota, also called gut flora — the microorganisms that live in the digestive tract. This happens because antibiotics eliminate any pathogenic or bad bacteria, but also good bacteria.  

How long does it take for baby probiotics to work?

Parenting FAQs

The time it takes for baby probiotics to work can vary depending on the individual baby and the specific probiotic being used. In some cases, a baby's digestive symptom will colonise these friendly bacteria within a few days or weeks of starting probiotic supplementation. Probiotics are designed to support the digestive system while they are being consumed, there is no guarantee your baby’s digestive tract will continue to colonise these specific bacteria if you stop giving them and may revert back to its natural microflora balance. It is best to talk to your healthcare professional for guidance on the appropriate use and duration of probiotics depending on your baby's specific needs.

Do babies need probiotics?

Parenting FAQs

All babies will develop their own natural gut flora once they are born. Breast milk for example naturally contains beneficial bacteria that supports a baby's gut health. Negative influences on a baby’s gut flora development can include being born by c-section, or taking antibiotics, and in these instances, probiotics may be recommended.  Additionally, probiotics may be recommended for babies with specific health conditions, e.g. infant colic. However, it is important to consult with a healthcare professional to get the correct probiotic recommendation based on individual circumstances.

When to stop probiotics for babies?

Parenting FAQs

As probiotics help support a healthy gut flora, continued use can be beneficial. The decision to stop probiotics for babies can vary depending on the individual baby's needs and the specific probiotic being used. In general, probiotics may be discontinued once the specific condition or issue for which they were recommended has resolved or improved. If you are unsure, follow the guidance of a healthcare professional who can assess your baby’s progress and determine the appropriate time to discontinue probiotic supplementation. 

Do baby probiotics help with gas?

Parenting FAQs

Babies can get gas for several reasons, so it’s difficult to answer broadly that all probiotics will help with alleviating gas.  Probiotics can promote a healthy balance of gut bacteria, supporting the digestive system when there is an imbalance of good and bad gut bacteria. It is important to talk to your healthcare professional before giving probiotics to address gas issues in your baby. They can provide guidance on the appropriate probiotic strain, dosage, and duration of use based on the baby's specific needs and health condition.

Do breastfed babies need probiotics?

Parenting FAQs

Breast milk naturally contains beneficial bacteria that support a baby's gut health. Additionally, breast milk provides unique food for these healthy bacteria called human milk oligosaccharides (HMOs), as well as an ideal balance of nutrients and antibodies that continue to promote the growth of beneficial gut bacteria. However, there may be certain circumstances where probiotics are recommended for breastfed babies, such as if the baby has specific health conditions (e.g. Colic) or has been on antibiotics. If you are unsure which probiotic is right for your baby, talk to your healthcare professional for personalised advice.

When to give baby probiotics?

Parenting FAQs

Any probiotic that is suitable for babies will state the suitable age group on the label. Look for baby probiotics that are labelled for babies ‘from birth’ on the front of pack. Probiotics may be recommended in specific situations such as when a baby has digestive issues, has been on antibiotics, or has certain health conditions (e.g. colic). Follow guidance from a healthcare professional for the appropriate timing and dosage of probiotics for your baby.